update for samtools 1.3

Ecogenomics / BamM

Metagenomics-focused BAM file manipulation

http://ecogenomics.github.io/BamM/

GNU Lesser General Public License v3.0

16 stars 7 forks source link

Closed timbalam closed 8 years ago

timbalam commented 8 years ago

With the update to samtools 1.3, samtools sort takes -o flag for output filename. Changes bamm make to use this flag.

wwood commented 8 years ago

Thanks. Please do keep submitting pull requests like this even though you have access, so I don't lose touch.