timbalam
commented
6 years ago Hello! For the moment BamM will only work with Python 2, and unfortunately not with Python 3.
On 29 March 2018 5:36:18 pm GMT+02:00, skaffen-amtiskaw notifications@github.com wrote:
Hi, I am attempting to build BamM for use with GroopM and I am running into an error. This is centos 7.
gcc version 4.8.5 20150623 (Red Hat 4.8.5-11) (GCC) python --version Python 3.6.4 :: Anaconda, Inc.
I've cloned the latest release of BamM here: https://github.com/ecogenomics/BamM
As soon as I try to run the setup.py I get the error:
python setup.py File "setup.py", line 41 print "Embedded C options (for building libPMBam.a) USE: --OPTION
PATH" ^ SyntaxError: invalid syntax Anyone run into this?
Thanks!
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Hi, I am attempting to build BamM for use with GroopM and I am running into an error. This is centos 7.
gcc version 4.8.5 20150623 (Red Hat 4.8.5-11) (GCC) python --version Python 3.6.4 :: Anaconda, Inc.
I've cloned the latest release of BamM here: https://github.com/ecogenomics/BamM
As soon as I try to run the setup.py I get the error:
python setup.py File "setup.py", line 41 print "Embedded C options (for building libPMBam.a) USE: --OPTIONPATH"
^
SyntaxError: invalid syntax
I've successfully built groopM and BamM on this same system with the python2 version of anaconda. But that one is hitting a bug so I figured I'd try python 3 to see if its corrected. This is a fresh build directory of BamM and groopM.
Has anyone run into this?
Thanks!