Ecogenomics / BamM

Metagenomics-focused BAM file manipulation
http://ecogenomics.github.io/BamM/
GNU Lesser General Public License v3.0
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Profile #53

Closed timbalam closed 6 years ago

timbalam commented 6 years ago

This PR implements a 'bamm profile' mode that prints out a table of the values that 'bamm filter' uses when filtering. It includes a new c module 'bamProfiler.c', and a nosetest for the 'bamm profile' command.

I'm not very good at git, so there's a bunch of other things in the PR too. My new machine has an updated automake version, so all of the auto generated files have changed. :( Also, I had previously implemented some new coverage metrics in my branch that I didn't get around to pushing here until now.

@dparks1134