Closed lucaspompeun closed 4 years ago
Hi,
BamM is not maintained any more. Use CoverM, it is much better.
From: Lucas Pompeu notifications@github.com Sent: Saturday, February 15, 2020 3:52:27 AM To: Ecogenomics/BamM BamM@noreply.github.com Cc: Subscribed subscribed@noreply.github.com Subject: [Ecogenomics/BamM] Problems installing BamM (#56)
Help, I've received this error:
Traceback (most recent call last):
File "/usr/local/bin/groopm", line 54, in
run pip to clusters don't fix it
— You are receiving this because you are subscribed to this thread. Reply to this email directly, view it on GitHubhttps://github.com/Ecogenomics/BamM/issues/56?email_source=notifications&email_token=AAADX5FVYPY3XFQZBQ2QQ43RC3K5XA5CNFSM4KVM2E7KYY3PNVWWK3TUL52HS4DFUVEXG43VMWVGG33NNVSW45C7NFSM4INUNIPQ, or unsubscribehttps://github.com/notifications/unsubscribe-auth/AAADX5HRUFZNAIYMOPGC6YTRC3K5XANCNFSM4KVM2E7A.
I need BamM to use GroopM. I really need support
Em sex, 14 de fev de 2020 17:28, Ben J Woodcroft notifications@github.com escreveu:
Hi,
BamM is not maintained any more. Use CoverM, it is much better.
From: Lucas Pompeu notifications@github.com Sent: Saturday, February 15, 2020 3:52:27 AM To: Ecogenomics/BamM BamM@noreply.github.com Cc: Subscribed subscribed@noreply.github.com Subject: [Ecogenomics/BamM] Problems installing BamM (#56)
Help, I've received this error:
Traceback (most recent call last): File "/usr/local/bin/groopm", line 54, in
from groopm import groopm File "/usr/local/lib/python2.7/dist-packages/groopm/groopm.py", line 56, in import cluster File "/usr/local/lib/python2.7/dist-packages/groopm/cluster.py", line 94, in from scipy.misc import imsave ImportError: cannot import name imsave run pip to clusters don't fix it
— You are receiving this because you are subscribed to this thread. Reply to this email directly, view it on GitHub< https://github.com/Ecogenomics/BamM/issues/56?email_source=notifications&email_token=AAADX5FVYPY3XFQZBQ2QQ43RC3K5XA5CNFSM4KVM2E7KYY3PNVWWK3TUL52HS4DFUVEXG43VMWVGG33NNVSW45C7NFSM4INUNIPQ>, or unsubscribe< https://github.com/notifications/unsubscribe-auth/AAADX5HRUFZNAIYMOPGC6YTRC3K5XANCNFSM4KVM2E7A
.
— You are receiving this because you authored the thread. Reply to this email directly, view it on GitHub https://github.com/Ecogenomics/BamM/issues/56?email_source=notifications&email_token=AB5BNZMPIBIMDLXBREOZC4DRC35HFA5CNFSM4KVM2E7KYY3PNVWWK3TUL52HS4DFVREXG43VMVBW63LNMVXHJKTDN5WW2ZLOORPWSZGOEL2KY4I#issuecomment-586460273, or unsubscribe https://github.com/notifications/unsubscribe-auth/AB5BNZJVRUSI3TVTDQLGH2DRC35HFANCNFSM4KVM2E7A .
I need BamM to use GroopM. I really need support
Hi Lucas,
This seems to be a groopm issue not a BamM one. I suggest installing the dependencies exactly as they are in the setup.py i.e. scipy 0.15.0, not the newest version. ben
On Sat, 15 Feb 2020 at 06:31, Lucas Pompeu notifications@github.com wrote:
I need BamM to use GroopM. I really need support
— You are receiving this because you commented. Reply to this email directly, view it on GitHub https://github.com/Ecogenomics/BamM/issues/56?email_source=notifications&email_token=AAADX5B5RPJTIDEKFGNAZ7TRC35SNA5CNFSM4KVM2E7KYY3PNVWWK3TUL52HS4DFVREXG43VMVBW63LNMVXHJKTDN5WW2ZLOORPWSZGOEL2LA6Q#issuecomment-586461306, or unsubscribe https://github.com/notifications/unsubscribe-auth/AAADX5FJXMCGM4TCAG2HTWDRC35SNANCNFSM4KVM2E7A .
Ben Woodcroft http://ecogenomic.org/users/ben-woodcroft http://www.ecogenomic.org/
Help, I've received this error:
run pip to clusters don't fix it