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Ecogenomics / BamM

Metagenomics-focused BAM file manipulation
http://ecogenomics.github.io/BamM/
GNU Lesser General Public License v3.0
16 stars 7 forks source link

Problems installing BamM #56

Closed lucaspompeun closed 4 years ago

lucaspompeun commented 4 years ago

Help, I've received this error:

Traceback (most recent call last):
  File "/usr/local/bin/groopm", line 54, in <module>
    from groopm import groopm
  File "/usr/local/lib/python2.7/dist-packages/groopm/groopm.py", line 56, in <module>
    import cluster
  File "/usr/local/lib/python2.7/dist-packages/groopm/cluster.py", line 94, in <module>
    from scipy.misc import imsave
ImportError: cannot import name imsave

run pip to clusters don't fix it

wwood commented 4 years ago

Hi,

BamM is not maintained any more. Use CoverM, it is much better.

From: Lucas Pompeu notifications@github.com Sent: Saturday, February 15, 2020 3:52:27 AM To: Ecogenomics/BamM BamM@noreply.github.com Cc: Subscribed subscribed@noreply.github.com Subject: [Ecogenomics/BamM] Problems installing BamM (#56)

Help, I've received this error:

Traceback (most recent call last): File "/usr/local/bin/groopm", line 54, in from groopm import groopm File "/usr/local/lib/python2.7/dist-packages/groopm/groopm.py", line 56, in import cluster File "/usr/local/lib/python2.7/dist-packages/groopm/cluster.py", line 94, in from scipy.misc import imsave ImportError: cannot import name imsave

run pip to clusters don't fix it

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lucaspompeun commented 4 years ago

I need BamM to use GroopM. I really need support

Em sex, 14 de fev de 2020 17:28, Ben J Woodcroft notifications@github.com escreveu:

Hi,

BamM is not maintained any more. Use CoverM, it is much better.

From: Lucas Pompeu notifications@github.com Sent: Saturday, February 15, 2020 3:52:27 AM To: Ecogenomics/BamM BamM@noreply.github.com Cc: Subscribed subscribed@noreply.github.com Subject: [Ecogenomics/BamM] Problems installing BamM (#56)

Help, I've received this error:

Traceback (most recent call last): File "/usr/local/bin/groopm", line 54, in from groopm import groopm File "/usr/local/lib/python2.7/dist-packages/groopm/groopm.py", line 56, in import cluster File "/usr/local/lib/python2.7/dist-packages/groopm/cluster.py", line 94, in from scipy.misc import imsave ImportError: cannot import name imsave

run pip to clusters don't fix it

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.

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lucaspompeun commented 4 years ago

I need BamM to use GroopM. I really need support

wwood commented 4 years ago

Hi Lucas,

This seems to be a groopm issue not a BamM one. I suggest installing the dependencies exactly as they are in the setup.py i.e. scipy 0.15.0, not the newest version. ben

On Sat, 15 Feb 2020 at 06:31, Lucas Pompeu notifications@github.com wrote:

I need BamM to use GroopM. I really need support

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