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Ecogenomics / CheckM

Assess the quality of microbial genomes recovered from isolates, single cells, and metagenomes
https://ecogenomics.github.io/CheckM/
GNU General Public License v3.0
347 stars 73 forks source link

guppy: loadlocale.c:129 #337

Closed SilasK closed 2 years ago

SilasK commented 2 years ago

We had this strange error encountered in checkM, I have a possible solution and wanted to mention it to you.

https://github.com/metagenome-atlas/atlas/issues/525

SilasK commented 2 years ago

We encountered this error Any idea what we can do now

/checkm/storage/tree/concatenated.pplacer.json has no placements!"

donovan-h-parks commented 2 years ago

Hi Silas,

Guppy is part of the pplacer package. I haven't run across either of the issues you've pointed out. The most common issue we see with pplacer is systems running out of RAM.

Cheers, Donovan