The GTDB provides the software infrastructure for working with a large collection of genomic resources. The major goal of this initiative is to provide a phylogenetically consistent taxonomy for archaea and bacteria.
It would be nice if flags such as the number of threads (-t) were 'inherited' so they appeared in all help menus (i.e., gtdb create tree) and could be invoked as a typical flag (i.e., gtdb create tree -t 32 instead of gtdb -t create tree).
It would be nice if flags such as the number of threads (-t) were 'inherited' so they appeared in all help menus (i.e., gtdb create tree) and could be invoked as a typical flag (i.e., gtdb create tree -t 32 instead of gtdb -t create tree).