Pull genome sequence data from GTDB

Ecogenomics / GTDBNCBI

The GTDB provides the software infrastructure for working with a large collection of genomic resources. The major goal of this initiative is to provide a phylogenetically consistent taxonomy for archaea and bacteria.

https://gtdb.ecogenomic.org/

GNU General Public License v3.0

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Pull genome sequence data from GTDB #30

Closed donovan-h-parks closed 8 years ago

donovan-h-parks commented 8 years ago

We should provide an interface for pulling genomic (i.e., the nucleotide tide sequences) and gene (i.e., the called genes in amino acid space) data from the GTDB. This would be a straight dump of the _genomic.fna and/or _protein.faa files.

donovan-h-parks commented 8 years ago

Implemented in v0.0.4.