Delete aligned markers with no marker sets

Ecogenomics / GTDBNCBI

The GTDB provides the software infrastructure for working with a large collection of genomic resources. The major goal of this initiative is to provide a phylogenetically consistent taxonomy for archaea and bacteria.

https://gtdb.ecogenomic.org/

GNU General Public License v3.0

9 stars 2 forks source link

Delete aligned markers with no marker sets #38

Closed pchaumeil closed 8 years ago

pchaumeil commented 8 years ago

Currently aligned markers are stored in the database even if the marker set listing them has been removed. To only store meaningful aligned markers in the database, it would be better to delete all aligned markers which are not associated to any marker set.

pchaumeil commented 8 years ago

The aligned markers removal step has been implemented and will be available in the next release of GTDB