Additional metadata about marker sets would be helpful

Ecogenomics / GTDBNCBI

The GTDB provides the software infrastructure for working with a large collection of genomic resources. The major goal of this initiative is to provide a phylogenetically consistent taxonomy for archaea and bacteria.

https://gtdb.ecogenomic.org/

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Additional metadata about marker sets would be helpful #45

Closed donovan-h-parks closed 8 years ago

donovan-h-parks commented 8 years ago

It would be nice to dynamically add the following to the ARB and GTDB metadata files for each genome:

marker_gene_count: number of single copy genes identified for the marker set
marker_genes_in_set: total number of genes in the marker set
msa_aa_count: number of amino acids in the MSA (after all filtering)
msa_length: total length of the MSA (after all filtering)

donovan-h-parks commented 8 years ago

Implemented as msa_gene_count, msa_num_marker_genes, msa_aa_count, msa_length in v2.1.3.