The GTDB provides the software infrastructure for working with a large collection of genomic resources. The major goal of this initiative is to provide a phylogenetically consistent taxonomy for archaea and bacteria.
It would be helpful to have a field indicating in a genome is an isolate or environmental genome (MAG or SAG). Ideally this field would use a controlled vocabulary of: ISOLATE, MAG, SAG.
I have a script for calculating this, but we would need to formally integrate this into the GTDB:
srv/whitlam/projects1/gtdb/release86/r86_taxonomy/derived_from_metagenomes.py
It would be helpful to have a field indicating in a genome is an isolate or environmental genome (MAG or SAG). Ideally this field would use a controlled vocabulary of: ISOLATE, MAG, SAG.
I have a script for calculating this, but we would need to formally integrate this into the GTDB: srv/whitlam/projects1/gtdb/release86/r86_taxonomy/derived_from_metagenomes.py