Closed arijitnus closed 1 year ago
Hi,
If you want to read directly the summary files from classify_wf you need to use --gtdbtk_classification_file
instead of --custom_taxonomy_file
( although you will have to delete every row where classification is not 7 rank long -i.e all Unclassified Bacteria-)
--custom_taxonomy_file
only works with the format GENOME_ID
Ticket closed due to inactivity.
Hi, I am running gtdbtk denovo_wf on my Metagenome Assembled Genomes (MAGs) and seems it can't read the taxonomy file from classify_wf. May I seek your opinion on this matter?
I have uploaded the log file and the output classification file
Server information
Debugging information
gtdbtk.log
has been included (drag and drop the file to upload).gtdbtk.log classification_file.xlsx