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Ecogenomics / GTDBTk

GTDB-Tk: a toolkit for assigning objective taxonomic classifications to bacterial and archaeal genomes.
https://ecogenomics.github.io/GTDBTk/
GNU General Public License v3.0
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Getting the GTDB version used from GTDB-Tk #578

Closed wwood closed 8 months ago

wwood commented 8 months ago

Hi there,

Is there some way to determine what GTDB version underlies a certain GTDB-Tk version?

I'm looking for something along the lines of

$ gtdbtk gtdb-version
08-RS214

I have two sets of taxonomies. One I know the provenance of, and the other is generated by GTDB-Tk, so just wanting to know if they match up.

Thanks, ben

pchaumeil commented 8 months ago

Hi Ben, when opening a gtdbtk.log file generated by any of Tk command, one of the first line of the file should tell you which version if GTDB is used to run this command.

[2022-07-11 11:30:31] INFO: Using GTDB-Tk reference data version r207: /srv/db/gtdbtk/official/release207_v2/

Thanks, Pierre

wwood commented 8 months ago

cheers.