combining paired end reads when the forward and reverse files don't match

[rec3141]

Here is a script that can be used to re-synchronize your forward and reverse paired-end reads in FASTQ files if they get out of sync due to trimming or other quality control steps, for example.

https://github.com/Ecological-and-Evolutionary-Genomics/Scripts/blob/master/fastqCombinePairedEnd.py