move organismal qualities to PATO or OBA

[cmungall]

The following are under organismal quality. I recommend moving most of these to PATO or OBA, or both.

In some cases, the label is more generic than the definition, e.g. nocturnal. I recommend having the general quality in PATO (e.g. nocturnal - a characteristic of an activity/process that happens during the night) and having the organismal quality in OBA.

Additional notes:

• area-to-mass-ratio is misplaced, this should just go directly under ratio in PATO
• there is a separate ticket for diet
• some of these say "evolutionary quality" as the genus, but the actual parent is "organismal quality". These should match

[Term]
id: ECOCORE:00000024
name: area to mass ratio
def: "Quotient (or ratio) of surface area of an organism divided by the mass of the same organism" []
is_a: PATO:0001995 ! organismal quality

[Term]
id: ECOCORE:00000027
name: primary diet
def: "Type of food comprising the majority of the diet of an organism" []
is_a: PATO:0001995 ! organismal quality

[Term]
id: ECOCORE:00000039
name: cursorial
def: "An evolutionary quality inhering in a bearer by virtue of the bearer's morphological and physiological adaptation for running" []
is_a: PATO:0001995 ! organismal quality

[Term]
id: ECOCORE:00000040
name: fossorial
def: "An evolutionary quality inhering in a bearer by virtue of the bearer's morphological and physiological adaptation for digging and living underground" []
is_a: PATO:0001995 ! organismal quality

[Term]
id: ECOCORE:00000041
name: arboreal
def: "An evolutionary quality inhering in a bearer by virtue of the bearer's morphological and physiological adaptation for living in trees" []
is_a: PATO:0001995 ! organismal quality

[Term]
id: ECOCORE:00000078
name: crepuscular
is_a: PATO:0001995 ! organismal quality

[Term]
id: ECOCORE:00000079
name: nocturnal
def: "An evolutionary quality inhering in a bearer by virtue of the bearer's morphological and physiological adaptation for being active during the hours of darkness" []
is_a: PATO:0001995 ! organismal quality

[Term]
id: ECOCORE:00000080
name: diurnal
def: "An evolutionary quality inhering in a bearer by virtue of the bearer's morphological and physiological adaptation for being active during the hours of daylight" []
is_a: PATO:0001995 ! organismal quality

[Term]
id: ECOCORE:00000081
name: migratory
def: "An evolutionary quality inhering in a bearer by virtue of the bearer's morphological and physiological adaptation for participating in long-distance movement of conspecifics, usually on a seasonal basis" []
is_a: PATO:0001995 ! organismal quality

[Term]
id: ECOCORE:00000142
name: anecic
def: "An organismal quality inhering in a bearer by virtue of the bearer's ability to burrow more than 20 cm deep into the soil and make permanent, vertical burrows." []
is_a: PATO:0001995 ! organismal quality

[diatomsRcool]

See pending PR in PATO https://github.com/pato-ontology/pato/pull/405

[diatomsRcool]

@richardostler The earthworm terms you requested have found a more proper home in the PATO ontology. Thus, I would like to deprecate the ECOCORE terms. Are you using these ECOCORE terms? Would it be possible for you to use the PATO terms instead?