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EddyRivasLab / R-scape

RNA Structural Covariation Above Phylogenetic Expectation
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Fatal exception with --RAF options #3

Open AMA-cs opened 8 hours ago

AMA-cs commented 8 hours ago

Hello @RivasLab

I was trying to test R-scape using the example data. I'm interested in trying the option --RAFSp with --naive as mentioned in the paper.

bin/R-scape --naive --RAFSp --window 500 --slide 100 HOTAIR_D1.sto

However, when I tried this options I get an exception message:

Fatal exception (source file esl_getopts.c, line 1323): something's wrong with format of optlist: --MIr,--MIra,--MIrp, --MIg,--MIga,--MIgp,--OMES,--OMESa,--OMESp,--RAF,--RAFa,--RAFp,--RAFS,--RAFSa,--RAFSp,--CCF,--CCFp,--CCFa

Aborted (core dumped)

The command runs with all the arguments/options I provided except --RAFSp. Could you please share any insight to resolve this issue?

Thank you

RivasLab commented 7 hours ago

Hello,

which version of R-scape are you using?

Current is R-svape v2.0.5.f which you can download from http://rivaslab.org/

I belive the issue you observe was fixed at an earlier version.

Please, let me know if you run into any additional issues Elena

On Nov 14, 2024, at 10:07, AMA @.***> wrote:

Hello @RivasLab I was trying to test R-scape using the example data. I'm interested in trying the option --RAFSp with --naive as mentioned in the paper. bin/R-scape --naive --RAFSp --window 500 --slide 100 HOTAIR_D1.sto However, when I tried this options I get an exception message: Fatal exception (source file esl_getopts.c, line 1323): something's wrong with format of optlist: --MIr,--MIra,--MIrp, --MIg,--MIga,--MIgp,--OMES,--OMESa,--OMESp,--RAF,--RAFa,--RAFp,--RAFS,--RAFSa,--RAFSp,--CCF,--CCFp,--CCFa Aborted (core dumped) The command runs with all the arguments/options I provided except --RAFSp. Could you please share any insight to resolve this issue? Thank you — Reply to this email directly, view it on GitHub, or unsubscribe. You are receiving this because you were mentioned.Message ID: @.***>

AMA-cs commented 5 hours ago

@RivasLab Thank you so much. It worked now after I downloaded it from the link you shared. It'd be helpful to add a note in the README for the correct version link.