ID e4
TITLE Long options called ambiguous abbreviation, if a prefix of another option
AFFECTS HMMER 3.0b3 (and earlier)
FIXED_IN -
STATUS CLOSED
XREF J5/116
REPORTED_BY Maufrais Corinne maufrais@pasteur.fr; 27 Nov 2009
OPENED_DATE SRE, Tue Dec 1 11:24:43 2009
CLOSED_DATE SRE, Tue Dec 1 11:24:46 2009
DESCRIPTION
hmmsim --s gives
"Failed to parse command line: Abbreviated option "--s" is ambiguous"
because esl_getopts thinks --s is an abbreviation for --seed or --stall.
get_optidx_abbrev() revised to allow exact matches to long options.
esl_getopts unit test revised to catch this bug.
ID e4 TITLE Long options called ambiguous abbreviation, if a prefix of another option AFFECTS HMMER 3.0b3 (and earlier) FIXED_IN - STATUS CLOSED XREF J5/116 REPORTED_BY Maufrais Corinne maufrais@pasteur.fr; 27 Nov 2009 OPENED_DATE SRE, Tue Dec 1 11:24:43 2009 CLOSED_DATE SRE, Tue Dec 1 11:24:46 2009 DESCRIPTION
hmmsim --s gives "Failed to parse command line: Abbreviated option "--s" is ambiguous" because esl_getopts thinks --s is an abbreviation for --seed or --stall.
get_optidx_abbrev() revised to allow exact matches to long options. esl_getopts unit test revised to catch this bug.