ID e5
TITLE Blank text line following #=GF handled improperly.
AFFECTS HMMER 3.0 and earlier
FIXED_IN -
STATUS CLOSED
XREF J6/92
REPORTED_BY Sean Powell spowell@embl.de
OPENED_DATE SRE, Tue Jul 13 09:25:29 2010
CLOSED_DATE -
DESCRIPTION
Easel Stockholm parser allows blank lines for #=GF DE annotation, but
HMMER strictly requires DESC format in save files. Thus hmmbuild
can generate a file that other HMMER programs won't parse.
Stockholm parser does need to allow blank lines on #=GF CC, for
legacy reasons (human-readable spacing in CC comments). All other
=GF lines rigorously enforce the presence of text.
Revised esl_msa.c::parse_gf().
Added i3-blank-gf.pl in testsuite.
ID e5 TITLE Blank text line following #=GF handled improperly.
AFFECTS HMMER 3.0 and earlier
FIXED_IN -
STATUS CLOSED
XREF J6/92
REPORTED_BY Sean Powell spowell@embl.de
OPENED_DATE SRE, Tue Jul 13 09:25:29 2010
CLOSED_DATE -
DESCRIPTION
Easel Stockholm parser allows blank lines for #=GF DE annotation, but HMMER strictly requires DESC
format in save files. Thus hmmbuild can generate a file that other HMMER programs won't parse.Stockholm parser does need to allow blank lines on #=GF CC, for legacy reasons (human-readable spacing in CC comments). All other
=GF lines rigorously enforce the presence of text.
Revised esl_msa.c::parse_gf(). Added i3-blank-gf.pl in testsuite.