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EddyRivasLab / easel

Sequence analysis library used by Eddy/Rivas lab code
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esl-shuffle -A fails, complaining of "no such option --boot" #24

Closed cryptogenomicon closed 6 years ago

cryptogenomicon commented 6 years ago

esl-shuffle -A (alignment shuffling and bootstrapping) fails, saying no such option --boot. Problem appears to be that the code is testing for --boot, but the option is -b.

ppgardne commented 5 years ago

Have just done a pull and am getting the same error:

./miniapps/esl-shuffle  -A  ~/inst/rscape/tutorial/ar14.sto
no such option --boot

Can you replicate, or do you need more info?

cryptogenomicon commented 5 years ago

Master (release) branch still has the bug because we haven't done a HMMER or Infernal release since committing the fix. A new HMMER3 release is coming soon - either hang out for that, or (better option!) build the Easel develop branch, which is very stable these days.

    git checkout develop
    autoconf
    ./configure; make
ppgardne commented 5 years ago

That works a treat. Thanks! New HMMER3, exciting!