Closed 3719left closed 3 years ago
I am using esl-sfetch for retrieves of about 40K substrings and these pop out:
awk '{print $1"/"$2"-"$3, $2, $3, $1}' newdata.txt | esl-sfetch -Cf KSfullprotein.fa - > juKS.fa Fatal exception (source file esl_sqio_ascii.c, line 1986): Failed to fetch subsequence residues -- corrupt coords? Aborted (core dumped) FYI: EGP_GG01D1_R2_100387_2/2-365 2 365 EGP_GG01D1_R2_100387_2 EGP_GG01D1_R2_102123_29/2-368 2 368 EGP_GG01D1_R2_102123_29 EGP_GG01D1_R2_105669_1/1-184 1 184 EGP_GG01D1_R2_105669_1 EGP_GG01D1_R2_11253_1/81-392 81 392 EGP_GG01D1_R2_11253_1 EGP_GG01D1_R2_127404_1/3-232 3 232 EGP_GG01D1_R2_127404_1 grep -A 3 "EGP_GG01D1_R2_11253_1" KSfullprotein.fa >EGP_GG01D1_R2_11253_1 VDVSEIREEAGFFDLGMDSLMAIELRRRLEQSVGKELPATLAMDFPRLSDVADYLLGDVLGLTEKPGAATPVQPSATTASDEPIAIISVACRFPGSPDADAYWEVLSGGVDAIREIPEDRFDVDEFYDPDQQAPGKIYTRSGGYLDRVDEFDPEFFGISPREAVWMDPQQRLMLEIAWESLERAGYAPASLRGSRTGVFVGVGANEYAHLMSGNSVEHLEAYFITGNALNAVAGRVAFTLGLEGPAVAMDTACSSSLVAVHQATQALRSGDCDMALAGGVNILLSPASIVAASRARMLAPDGRCKTFDAAADGYVRGEGCGILVLKRLSDAQRDGDRICAVIRSTAVNQDGASSGLTVPNGGAQQRLIRAALARAGLRGGDVDYLEAHGTGT >EGP_GG01D1_R2_127404_1 AATGSGGPRIGLVLGLGAEHLKRWEGDFLAGGTRVFEPRRERTIVHALARRLQIRGPAVTVAAACASSGYAMAMGRSWIHAGWVDACVVGGCDILSPTAIAAFYNLRALSRRSDEPAKASRPFDKARDGFVMGEGGAFFMLERQSAAVARGARRYGELAGVGMSSDGVHMVIPSSDPVQAAAAITAALVDADAAPADVDYVNAHAAGTPVGDVAEAGAIRLALGTAADGVPV
The forth one somehow failed.
Same situation as https://www.biostars.org/p/402423/
Is it a bug?
I am using esl-sfetch for retrieves of about 40K substrings and these pop out:
The forth one somehow failed.
Same situation as https://www.biostars.org/p/402423/
Is it a bug?