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EddyRivasLab / easel

Sequence analysis library used by Eddy/Rivas lab code
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CT to WUSS format convertion #71

Closed mkazanov closed 1 year ago

mkazanov commented 1 year ago

Dear easel developers,

Is it possible to convert CT format file to WUSS format file using easel? If so, what command I should execute?

Thanks

cryptogenomicon commented 1 year ago

Easel has internal support for doing the conversion (i.e. we have function calls, esl_ct2wuss() and esl_ct2simplewuss()), but I don't think we have these hooked up to anything in any of our programs or Easel miniapps. If you know some C, it'd be pretty straightforward to write a little program to make the right call.

mkazanov commented 1 year ago

Dear Sean, thank you for the answer! I had a look into these functions and wondering what is the input int *ct? I suspect that it should be CT file, but why it is int and not string? If it is just an int array, what column out of six CT-file' columns is in this array? Possibly the 5-th column with the information on connectivity?

mkazanov commented 1 year ago

I figured out using comments before the functions.