ID h94
TITLE phmmer assigns incorrect scores to degenerate residues
AFFECTS 3.0
FIXED_IN 3.1b1
STATUS CLOSED
XREF SRE:J9/87; svn r3878
REPORTED_BY Elena Rivas
OPENED_DATE SRE, 25 Feb 2012
CLOSED_DATE SRE, 25 Feb 2012
DESCRIPTION
When converting joint probs p_ab to conditionals p(b|a),
p7builder{Load,Set}ScoreSystem() were only converting K canonical
residues, and leaving the degenerate residues as joints. Degenerate
residue scores were therefore incorrect, and highly penalized.
ID h94 TITLE phmmer assigns incorrect scores to degenerate residues AFFECTS 3.0 FIXED_IN 3.1b1 STATUS CLOSED XREF SRE:J9/87; svn r3878 REPORTED_BY Elena Rivas OPENED_DATE SRE, 25 Feb 2012 CLOSED_DATE SRE, 25 Feb 2012 DESCRIPTION
When converting joint probs p_ab to conditionals p(b|a), p7builder{Load,Set}ScoreSystem() were only converting K canonical residues, and leaving the degenerate residues as joints. Degenerate residue scores were therefore incorrect, and highly penalized.