ID h102
TITLE Marginal hits late in target might be filtered in an nhmmer search
AFFECTS 3.1b1
FIXED_IN 3.1b2
STATUS CLOSED
XREF -
REPORTED_BY Jim Notwell jimnotwell@gmail.com
OPENED_DATE TJW, Tue Sep 03 23:407:30 2013
CLOSED_DATE
DESCRIPTION
In a late stage of the nhmmer acceleration pipeline, sequence windows passing
the Forward filter were subjected to a significance test and filtered if
the estimated E-value was above threshold. This test proved not to be
conservative, with the result that some marginal hits were filtered when
they shouldn't have been. The test was removed, with no noticable impact
on speed.
ID h102 TITLE Marginal hits late in target might be filtered in an nhmmer search AFFECTS 3.1b1 FIXED_IN 3.1b2 STATUS CLOSED XREF - REPORTED_BY Jim Notwell jimnotwell@gmail.com OPENED_DATE TJW, Tue Sep 03 23:407:30 2013 CLOSED_DATE
DESCRIPTION
In a late stage of the nhmmer acceleration pipeline, sequence windows passing the Forward filter were subjected to a significance test and filtered if the estimated E-value was above threshold. This test proved not to be conservative, with the result that some marginal hits were filtered when they shouldn't have been. The test was removed, with no noticable impact on speed.