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EddyRivasLab / hmmer

HMMER: biological sequence analysis using profile HMMs
http://hmmer.org
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Alignment details in the tabular output #207

Closed gy-chop closed 4 years ago

gy-chop commented 4 years ago

Hello,

Thanks for developing and maintain the great tool. I just have a quick question. Is there a way to include alignment details in the tabular output of nhmmer (with --tblout or any other parameter) that is easy to parse, just like the BTOP string in BLAST+?

Thanks for your time!

cryptogenomicon commented 4 years ago

No, not yet, sorry.

nawrockie commented 4 years ago

The --notextw option makes the standard output alignments easier to parse.