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EddyRivasLab / hmmer

HMMER: biological sequence analysis using profile HMMs
http://hmmer.org
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unable to make hmmer for arm platform #246

Closed Yvonne-zyf0627 closed 2 years ago

Yvonne-zyf0627 commented 3 years ago

I was getting compiler errors when I tried to compile hmmer-h3-arm on the aarch64 platform: % git clone -b h3-arm https://github.com/EddyRivasLab/hmmer.git % cd hmmer % git clone https://github.com/EddyRivasLab/easel % autoconf % ./configure % make

Then I got the following error message:

p7_domain.c: In function ‘p7_domain_Compare’: p7_domain.c:525:3: error: too many arguments to function ‘esl_FCompare’ if(esl_FCompare(first->envsc, second->envsc, (float) atol, (float) rtol) != eslOK){ ^ In file included from p7_domain.c:15:0: ../easel/easel.h:515:13: note: declared here extern int esl_FCompare (float a, float b, float tol); ^ p7_domain.c:528:2: error: too many arguments to function ‘esl_FCompare’ if(esl_FCompare(first->domcorrection, second->domcorrection, (float) atol, (float) rtol) != eslOK){ ^ In file included from p7_domain.c:15:0: ../easel/easel.h:515:13: note: declared here extern int esl_FCompare (float a, float b, float tol); ^ p7_domain.c:531:2: error: too many arguments to function ‘esl_FCompare’ if(esl_FCompare(first->dombias, second->dombias, (float) atol, (float) rtol) != eslOK){ ^ In file included from p7_domain.c:15:0: ../easel/easel.h:515:13: note: declared here extern int esl_FCompare (float a, float b, float tol); ^ p7_domain.c:534:3: error: too many arguments to function ‘esl_FCompare’ if(esl_FCompare(first->oasc, second->oasc, (float) atol, (float) rtol) != eslOK){ ^ In file included from p7_domain.c:15:0: ../easel/easel.h:515:13: note: declared here extern int esl_FCompare (float a, float b, float tol); ^ p7_domain.c:537:3: error: too many arguments to function ‘esl_FCompare’ if(esl_FCompare(first->bitscore, second->bitscore, (float) atol, (float) rtol) != eslOK){ ^ In file included from p7_domain.c:15:0: ../easel/easel.h:515:13: note: declared here extern int esl_FCompare (float a, float b, float tol); ^ p7_domain.c:540:2: error: too many arguments to function ‘esl_DCompare’ if(esl_DCompare(first->lnP, second->lnP, atol, rtol) != eslOK){ ^ In file included from p7_domain.c:15:0: ../easel/easel.h:514:13: note: declared here extern int esl_DCompare (double a, double b, double tol); ^ p7_domain.c:566:5: error: too many arguments to function ‘esl_FCompare’ if(esl_FCompare(first->scores_per_pos[i], second->scores_per_pos[i], (float) atol, (float) rtol) != eslOK){ ^ In file included from p7_domain.c:15:0: ../easel/easel.h:515:13: note: declared here extern int esl_FCompare (float a, float b, float tol); ^ make[1]: [p7_domain.o] Error 1 make: [all] Error 2

npcarter commented 3 years ago

Hello. The h3-arm branch of HMMER requires the develop branch of Easel. From the errors you’re seeing, it looks like you’re compiling against the master branch of Easel. If you checkout the develop branch of Easel, everything should build.

As a note, we generally don’t recommend that people build the non-main branches of our code, as these are used for development and are often in a non-functional state. However, h3-arm is currently in a good state and will soon be rolled up into a formal release.

Yvonne-zyf0627 commented 3 years ago

Hello. The h3-arm branch of HMMER requires the develop branch of Easel. From the errors you’re seeing, it looks like you’re compiling against the master branch of Easel. If you checkout the develop branch of Easel, everything should build. As a note, we generally don’t recommend that people build the non-main branches of our code, as these are used for development and are often in a non-functional state. However, h3-arm is currently in a good state and will soon be rolled up into a formal release.

Thanks very much，I will try again.