Closed gciaberi closed 1 year ago
From the documentation:
makehmmerdb is used to create a binary file from a DNA sequence file. This binary file
may be used as a target database for the DNA search tool nhmmer.
No, it doesn't work for phmmer
or programs other than nhmmer
.
In the documentation about
makehmmerdb
, it says "... is used to create a binary file from a DNA sequence file." Can it be used for protein databases ? I've tried running it with default parameters on Uniref90, but after some time the process stops and I get "Killed" in my terminal.Are there other ways of speeding up search speed with
phmmer
beyond the--cpu
option ?