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EddyRivasLab / hmmer

HMMER: biological sequence analysis using profile HMMs
http://hmmer.org
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Filter results of hmmsearch #315

Open davidecrs opened 9 months ago

davidecrs commented 9 months ago

Hi,

I'm using hmmsearch to understand if a model of interest is present in a set of ORFs predicted by Prodigal. Specifically, I'm using the following code 

hmmsearch --tblout hmmsearch_table.txt -E 0.00001 -o /dev/null --cpu 8 --notextw model.hmm orf_predicted.faa

Is it possible to filter the results based on the percentage of identical matches ( or %coverage) or execute the hmmsearch to get reliable results based on these criteria? Do you have other suggestions to filter the results and to get only the reliable annotation?

I really appreciate any help you can provide. Best regards