ID h55
TITLE hmmbuild fails to build reasonable model on frag-rich MSA
STATUS CLOSED
XREF J5/45
REPORTED_BY Peter Williams (LBL)
OPENED_DATE SRE, Tue Jun 16 14:19:52 2009
CLOSED_DATE SRE, Tue Jun 16 14:19:53 2009
DESCRIPTION
hmmbuild did not have the fragment-marking step that I thought it
did; it failed to deal gracefully with fragment-filled alignments,
and built too-short models. Added call to esl_msa_MarkFragments()
to the build pipeline.
beta1 release: 17 June 2009
ID h55 TITLE hmmbuild fails to build reasonable model on frag-rich MSA STATUS CLOSED XREF J5/45 REPORTED_BY Peter Williams (LBL) OPENED_DATE SRE, Tue Jun 16 14:19:52 2009 CLOSED_DATE SRE, Tue Jun 16 14:19:53 2009 DESCRIPTION
hmmbuild did not have the fragment-marking step that I thought it did; it failed to deal gracefully with fragment-filled alignments, and built too-short models. Added call to esl_msa_MarkFragments() to the build pipeline.