EddyRivasLab / hmmer

HMMER: biological sequence analysis using profile HMMs
http://hmmer.org
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hmmbuild fails to build reasonable model on frag-rich MSA #65

Closed traviswheeler closed 7 years ago

traviswheeler commented 7 years ago

beta1 release: 17 June 2009

ID h55 TITLE hmmbuild fails to build reasonable model on frag-rich MSA STATUS CLOSED XREF J5/45 REPORTED_BY Peter Williams (LBL) OPENED_DATE SRE, Tue Jun 16 14:19:52 2009 CLOSED_DATE SRE, Tue Jun 16 14:19:53 2009 DESCRIPTION
hmmbuild did not have the fragment-marking step that I thought it did; it failed to deal gracefully with fragment-filled alignments, and built too-short models. Added call to esl_msa_MarkFragments() to the build pipeline.