EddyRivasLab / infernal

RNA secondary structure/sequence profiles for homology search and alignment
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readme and packages, containers #6

Closed bgruening closed 7 years ago

bgruening commented 7 years ago

I would love to add the Bioconda packages, the BioContainer and the Galaxy wrapper to the readme, but it looks like it is autogenerated. Any idea where to add it.

https://anaconda.org/bioconda/infernal https://quay.io/repository/biocontainers/infernal?tab=tags https://toolshed.g2.bx.psu.edu/view/bgruening/infernal/

cryptogenomicon commented 7 years ago

I'm sorry, I don't understand what you want to do. Can you explain more?

Our README is only about Infernal itself; we don't have any links to other software packages there.

bgruening commented 7 years ago

You readme file is not a proper github markdown file: https://github.com/EddyRivasLab/infernal/blob/master/README

It looks wired in github and I think it is just more internally, because it also contains variables as well. I wanted to add links to infernal packages for the conda package manager, for Docker containers and Galaxy integration. All of them are infernal integrations and things that makes it more easy to distribute and deploy infernal so I thought it would be nice to let the community now by putting the links somewhere prominent - maybe a readme file :)

cryptogenomicon commented 7 years ago

Thanks, but the README for Infernal doesn't seem like the right place for these links.

bgruening commented 7 years ago

And where is the correct place? These links will help the infernal community.

cryptogenomicon commented 7 years ago

I'll think about it, and discuss with Eric.

cryptogenomicon commented 7 years ago

I added these links to the Infernal home page. Thank you!

bgruening commented 7 years ago

Thanks @cryptogenomicon!

cryptogenomicon commented 7 years ago

btw, note that Infernal is now BSD licensed; the bioconda package has a GPLv3 flag on it.

bgruening commented 7 years ago

Oh sorry, I will fix this in https://github.com/bioconda/bioconda-recipes/pull/3484