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Edinburgh-Genome-Foundry / DnaCauldron

:alembic: Simple cloning simulator (Golden Gate etc.) for single and combinatorial assemblies
https://edinburgh-genome-foundry.github.io/DnaCauldron/
MIT License
50 stars 11 forks source link

example with ladders #17

Open antonkulaga opened 2 years ago

antonkulaga commented 2 years ago

It would be nice to have a report where ladders of restriction analysis are also generated. I know that people use PyDNA for it, but it is not clear for me how I can combine DnaCauldron assembly with ladders from PyDNA. And example can be useful.

Zulko commented 2 years ago

I don't know how this compares to PyDNA, but you can get restriction figures with BandWagon (see plotting a gel simulation), and you can use Bandwitch to automatically select enzymes that will produce nice bands for your constructs.