Compatibility with biopython 1.8.0 and bokeh 3

Edinburgh-Genome-Foundry / DnaFeaturesViewer

:eye: Python library to plot DNA sequence features (e.g. from Genbank files)

https://edinburgh-genome-foundry.github.io/DnaFeaturesViewer/

MIT License

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Compatibility with biopython 1.8.0 and bokeh 3 #74

Closed MrTomRod closed 1 year ago

MrTomRod commented 1 year ago

These fixes make DnaFeaturesViewer compatible with:

bokeh 3
biopython 1.80

This breaks compatibility with bokeh 2.4.3 and lower.

It is still compatible with older biopython

antonkulaga commented 1 year ago

Looking forward for it to be merged!

MrTomRod commented 1 year ago

@antonkulaga You probably know this, but if you need it now, you can install my branch like this: pip install git+https://github.com/MrTomRod/DnaFeaturesViewer

veghp commented 1 year ago

Thank you very much for the contribution