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Edinburgh-Genome-Foundry / DnaWeaver

A route planner for DNA assembly
https://dnaweaver.genomefoundry.org
MIT License
29 stars 9 forks source link

Contact Zulko #2

Closed andrewshvv closed 3 years ago

andrewshvv commented 3 years ago

Hey @Zulko, what is the best way to contact u if I have questions regarding the DnaWeaver functionality?

Zulko commented 3 years ago

Hey thanks for your interest in Weaver! In case it helps there are introductory slides here and a (never completely finished) paper there.

For general questions about capabilities the best would be to open a Github issue so it's transparent and easily findable by others in the future. If there are details you would prefer not to share publicly, I think the usually preferred method would be to ask @veghp (who is the current EGF software lead) via email at egf-software@ed.ac.uk, although for Weaver in particular I probably have the most knowledge, and you can find my personal email address in the git repo:

git clone git@github.com:Edinburgh-Genome-Foundry/DnaWeaver.git
cd DnaWeaver
git show HEAD~7  # my email at the top
andrewshvv commented 3 years ago

Thank u! I will check out the docs first, and if still have questions put it here.

pvegh commented 3 years ago

Hi @Zulko, you mixed me up with @veghp :)

Zulko commented 3 years ago

Sorry for the noise @pvegh ! I didn't write this in the Github so didn't have the autocompletion check.

andrewshvv commented 3 years ago

@Zulko I really-really like your presentation! Is there a video by any chance? The sequence decomposition is brilliant.

Zulko commented 3 years ago

Thanks! I am really happy about the methods I used in Weaver (and the fact that the A* algorithm works so well is really cool). Unfortunately I only gave this presentation once and I don't think it was recorded. I have a plan to write a "transcript" of it as some kind of very long blog post in the future, but no time frame for that. For now, the closest I have is the abstract (page 17 here) and the manuscript I linked above.

andrewshvv commented 3 years ago

No problem, thank you for your work!