EdinburghGenomics / smrtino

Run pipeline for PacBio Sequel SMRT cells
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Automated delivery of barcoded results #3

Open tbooth opened 1 year ago

tbooth commented 1 year ago

At present, we have to set off the demultiplexing manually in SMRT link post-run, then copy the files back manually.

Should be possible to automate this second part with some appropriate API queries, making for automated delivery.

Not sure how much this is a SMRTino issue versus adding stuff to the pacbio_scripts