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EichlerLab / isoseq_pipeline

Isoform detection with paralog-specific partitioning
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FLNC reads with low mapping quality are ignored #1

Open bnelsj opened 7 years ago

bnelsj commented 7 years ago

Add a rule to tofu.partition.snake to extract flnc reads that don't map anywhere with QV40.

zeeev commented 7 years ago

How many of the great ape reads are mapping with QV less than 40?