Commit to turn RepeatMasker off introduces buggy syntax

EichlerLab / smrtsv2

Structural variant caller

MIT License

53 stars 6 forks source link

Commit to turn RepeatMasker off introduces buggy syntax #30

Closed RSherman15 closed 5 years ago

RSherman15 commented 5 years ago

I think that in the commit disabling RepeatMasker as the default for "call", line 452 of rules/call.snakefile should be changed from shell: to run: Otherwise, this syntax is incorrect and results in an error.

paudano commented 5 years ago

That was definitely incorrect. It's fixed now. Thanks!