Currently when the file reader plugin is given a non-existent file it just hangs. When you hit ^C the following is printed to io.mc:
2016-07-07 11:51:25,658 Task exception was never retrieved
future: <Task finished coro=<ReadFile.run() done, defined at /Users/d3x923/Documents/projects/apbs/sphinx/plugins/ReadFile/plugin.py:118> exception=FileNotFoundError(2, 'No such file or directory') created at /Users/d3x923/Documents/projects/apbs/sphinx/sphinx/core/coordinator.py:135>
source_traceback: Object created at (most recent call last):
File "apbs.py", line 109, in <module>
sys.exit(main())
File "apbs.py", line 100, in main
coordinator.start(cmd, args, debug=debug)
File "/Users/d3x923/Documents/projects/apbs/sphinx/sphinx/core/coordinator.py", line 99, in start
exec(code, self._plugin_funcs, {'params':locals})
File "example/run_pdb2pqr.apbs", line 3, in <module>
pdb = read_file(params['pdb'])
File "/Users/d3x923/Documents/projects/apbs/sphinx/plugins/ReadFile/plugin.py", line 77, in __init__
super().__init__(**kwargs)
File "/Users/d3x923/Documents/projects/apbs/sphinx/sphinx/plugin/base.py", line 104, in __init__
self._task = self.runner.create_task(self.run())
File "/Users/d3x923/Documents/projects/apbs/sphinx/sphinx/core/coordinator.py", line 135, in create_task
task = self._loop.create_task(func)
Traceback (most recent call last):
File "/usr/local/Cellar/python3/3.5.2/Frameworks/Python.framework/Versions/3.5/lib/python3.5/asyncio/tasks.py", line 239, in _step
result = coro.send(None)
File "/Users/d3x923/Documents/projects/apbs/sphinx/plugins/ReadFile/plugin.py", line 121, in run
file = yield from self.open()
File "/usr/local/Cellar/python3/3.5.2/Frameworks/Python.framework/Versions/3.5/lib/python3.5/asyncio/coroutines.py", line 206, in coro
res = func(*args, **kw)
File "/Users/d3x923/Documents/projects/apbs/sphinx/plugins/ReadFile/plugin.py", line 102, in open
return open(self._file, 'r')
FileNotFoundError: [Errno 2] No such file or directory: '1fas'
2016-07-07 11:51:25,660 Task was destroyed but it is pending!
source_traceback: Object created at (most recent call last):
File "apbs.py", line 109, in <module>
sys.exit(main())
File "apbs.py", line 100, in main
coordinator.start(cmd, args, debug=debug)
File "/Users/d3x923/Documents/projects/apbs/sphinx/sphinx/core/coordinator.py", line 99, in start
exec(code, self._plugin_funcs, {'params':locals})
File "example/run_pdb2pqr.apbs", line 6, in <module>
pdb.write_stdout()
File "/Users/d3x923/Documents/projects/apbs/sphinx/plugins/WriteStdout/plugin.py", line 58, in __init__
super().__init__(**kwargs)
File "/Users/d3x923/Documents/projects/apbs/sphinx/sphinx/plugin/base.py", line 104, in __init__
self._task = self.runner.create_task(self.run())
File "/Users/d3x923/Documents/projects/apbs/sphinx/sphinx/core/coordinator.py", line 135, in create_task
task = self._loop.create_task(func)
task: <Task pending coro=<WriteStdout.run() done, defined at /Users/d3x923/Documents/projects/apbs/sphinx/plugins/WriteStdout/plugin.py:77> wait_for=<Future cancelled created at /usr/local/Cellar/python3/3.5.2/Frameworks/Python.framework/Versions/3.5/lib/python3.5/asyncio/base_events.py:252> cb=[_wait.<locals>._on_completion() at /usr/local/Cellar/python3/3.5.2/Frameworks/Python.framework/Versions/3.5/lib/python3.5/asyncio/tasks.py:414] created at /Users/d3x923/Documents/projects/apbs/sphinx/sphinx/core/coordinator.py:135>
There is an exception buried in there, and it's not being propagated. There is some magic to properly deal with exceptions when using asyncio.
Currently when the file reader plugin is given a non-existent file it just hangs. When you hit ^C the following is printed to io.mc:
There is an exception buried in there, and it's not being propagated. There is some magic to properly deal with exceptions when using asyncio.