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Electrostatics / apbs-pdb2pqr

APBS - software for biomolecular electrostatics and solvation
http://www.poissonboltzmann.org/
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GLIBCXX and CXXABI not found #531

Closed mwscandura closed 4 years ago

mwscandura commented 4 years ago

When attempting to invoke apbs get the following error:

apbs: /lib64/libstdc++.so.6: versionGLIBCXX_3.4.20' not found (required by apbs)' 'apbs: /lib64/libstdc++.so.6: version CXXABI_1.3.8' not found (required by apbs)' 'apbs: /lib64/libstdc++.so.6: versionGLIBCXX_3.4.21' not found (required by apbs)`

i'm unfamiliar with what these are, where they should be, why they'd be missing etc. I'm also pretty new to this kind of coding and APBS. any help appreciated

sobolevnrm commented 4 years ago

Hello -

I'm adding @Brandi-Lozano, Juan M juan.brandi-lozano@pnnl.gov and @Offor, Elvis elvis.offor@pnnl.gov for their help with this issue.

Thanks,

Nathan

On Wed, Nov 20, 2019 at 2:48 PM mwscandura notifications@github.com wrote:

When attempting to invoke apbs get the following error:

apbs: /lib64/libstdc++.so.6: version GLIBCXX_3.4.20' not found (required by apbs) apbs: /lib64/libstdc++.so.6: version CXXABI_1.3.8' not found (required by apbs) apbs: /lib64/libstdc++.so.6: version GLIBCXX_3.4.21' not found (required by apbs)`

i'm unfamiliar with what these are, where they should be, why they'd be missing etc. I'm also pretty new to this kind of coding and APBS. any help appreciated

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kozlac commented 4 years ago

Hello @mwscandura , what linux distribution, or more precisely, what version of gcc are you using? That error occurs when the system's standard c/c++ libraries are incompatible with the compiler used to create the APBS binary.

sobolevnrm commented 4 years ago

Hi @mwscandura. I'm going to close this issue because we're unable to proceed without the information @kozlac requested. If you're able to provide that information, then we'll reopen the issue. Thanks.