A software package for connecting cell level features in single cell RNA sequencing data with receptor ligand activity. Please be aware that an improved package, dominoSignal, is available.
Thank you for your great work on this package.
In your documentation for Domino, you recommend the use of pySCENIC as it is a faster implementation of SCENIC, which is also available as an R package. I have used your package with pySCENIC outputs and it works smoothly.
I am planning to use Domino with some samples for which I have SCENIC results already, but from the R package and not from pySCENIC. I wonder if there is a way to call create_domino() with the output files of the SCENIC R package directly. I have noticed that the files are generally different formats, and the R package output generally looks like this example: https://scenic.aertslab.org/scenic_paper/examples/SCENIC_MouseBrain/output/
Please let me know if you have any advice for this. Thank you!
Hello,
Thank you for your great work on this package. In your documentation for Domino, you recommend the use of pySCENIC as it is a faster implementation of SCENIC, which is also available as an R package. I have used your package with pySCENIC outputs and it works smoothly.
I am planning to use Domino with some samples for which I have SCENIC results already, but from the R package and not from pySCENIC. I wonder if there is a way to call
create_domino()with the output files of the SCENIC R package directly. I have noticed that the files are generally different formats, and the R package output generally looks like this example: https://scenic.aertslab.org/scenic_paper/examples/SCENIC_MouseBrain/output/Please let me know if you have any advice for this. Thank you!