Segmentation Fault but .fasta file has no line wrapping

ElofssonLab / PconsC4

Fast and easy contact prediction.

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Segmentation Fault but .fasta file has no line wrapping #9

Closed CuongVoThanh closed 3 years ago

CuongVoThanh commented 3 years ago

Hi Author,

I tried to run the code with .fasta file input. I checked that the .fasta file has no line wrapping but when I sill got the segmentation fault bug. I have spent a lot of effort but I still have yet had a solution.

Here is my .fasta file (I have changed to .txt because github doesnot allow to attach .fasta file) P78527.txt

Could you have a check the problem? Thanks you.

Dapid commented 3 years ago

That is a single sequence, you need to pass a multiple sequence alignment. You can use Jackhammer and reformat Stockholm to A3M using https://pypi.org/project/stockholm_reformat/