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ElucidataInc / ElMaven

LC-MS data processing tool for large-scale metabolomics experiments.
https://resources.elucidata.io/elmaven/
GNU General Public License v2.0
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.emDB file doesn't save "good" vs. manually labeled "bad" peak assignments #1374

Open lashmore opened 3 years ago

lashmore commented 3 years ago

Describe the bug After spending a lot of time assigning checkmarks for "good" peaks and X's for "bad" peaks, I save my project to an .emDB and exit EL-MAVEN. The following day, I launch EL-MAVEN, open my .emDB project, and my "good" and "bad" peaks are not saved, and I have to redo all that manual effort.

To Reproduce Steps to reproduce the behavior:

  1. Load your samples, do alignment, do peak detection.
  2. Click on the check marks for a few peaks, some X's if you like for bad peaks.
  3. Save the project, it will save as an .emDB.
  4. Close EL-MAVEN.
  5. Reopen EL-MAVEN, open the project .emDB file. Your checks and X's are gone as if you never made them.

Expected behavior I expect my checks and X's to be there when I open the .emDB project.

System (please complete the following information):

Additional context When I save my project, I do not use the Save project with raw data... option, just the Save project as... option under the File menu.

saif-el commented 3 years ago

Hi @lashmore. Is it possible to share this bad emDB file that you report did not save your good/bad peaks? emDB is supposed to save good and bad peak curation and restore it when opened. If you want you can share files on email (elmaven@elucidata.io) or however else you want to.