EmilyAlsentzer clinicalBERT issues

EmilyAlsentzer / clinicalBERT

repository for Publicly Available Clinical BERT Embeddings

MIT License

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issues

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How to run model and finetune it

#42 nageshpindi opened 1 year ago
1
unable to install requirements.txt

#41 sriraman2020 opened 1 year ago
0
Consequenes when using sequenece input larger than 128

#40 MoeBensu opened 2 years ago
0
Can't parse serialized Example

#39 robinlin1973 closed 2 years ago
1
model_max_len parameter in tokenizer

#38 ishpiki closed 3 years ago
3
Question: Better to use regular BioBERT on a dataset without marked PHI?

#37 caleb-lindgren closed 3 years ago
1
404 client error trying to access via Hugging Face

#36 NicoleJaneway closed 3 years ago
3
Instaling dependnices

#35 TahaAslani closed 3 years ago
3
Getting chinese or japanese words from the pretrained model instead of english

#34 strivedi02 closed 3 years ago
1
inquiry about cosine similarity between tokenized sentences

#33 johnsonpeng5 closed 3 years ago
2
Time of Preprocessing

#32 yikuan8 closed 3 years ago
1
Vocabulary for the pre-trained model is not updated ? Any reason why

#31 NeverInAsh closed 3 years ago
3
Model not able to initalize weights

#30 YojanaGadiya closed 3 years ago
3
Which labels to use with transformers libary ?

#29 LarsAC closed 3 years ago
2
Datasets

#28 phaniram-sayapaneni closed 3 years ago
4
Fix Date Bug in I2B2 2006 Preprocessing

#27 jenchen1398 closed 4 years ago
0
Tokenizer is not cased

#26 hjian42 closed 4 years ago
4
Question about mimic data preparation process

#25 passing2961 closed 4 years ago
3
Pre Trained Model support for Tensorflow v2

#24 dhanushanthp closed 4 years ago
2
Getting Started using transformers

#23 lukasfolle closed 4 years ago
3
Using NER for running HuggingFace Pipeline

#22 BrianThomasMcGrath closed 4 years ago
1
Multi-label classification of clinical text

#21 SaiTeja390 closed 4 years ago
1
Clarification on Tokenizer for MIMIC

#20 dramacloak closed 4 years ago
1
Interagtion with Huggingface/Transformers

#19 NeelKanwal closed 4 years ago
5
Support TensorFlow 2.0 or TensorFlow 1.15

#18 maziyarpanahi closed 4 years ago
1
Using the fine tuned models

#17 nikijean opened 4 years ago
0
Weight initialization Error on using pretrained model in pytorch

#16 adiv5 closed 4 years ago
2
Using pretrained clinicalBert model for extracting word/sentence or whole clinical note representation

#15 bbardakk closed 3 years ago
2
Couldnot Download Pretrained Weights file using axel or aria2

#14 adiv5 closed 4 years ago
1
Do you plan on re-training with newer BERT models such as ALBERT?

#13 Weilin37 closed 4 years ago
2
How to create note embeddings from pandas series using pretrained clinicalBERT+Discharge_summaries

#12 adiv5 closed 3 years ago
8
About your Biobert pretrain model

#11 Billy-Zhoup closed 4 years ago
1
About the pretrain Model

#10 Billy-Zhoup closed 4 years ago
2
Need python packages in run_ner.py

#9 betterzhou closed 4 years ago
1
Clarification on Tokenizer for MedNLI

#8 pruksmhc closed 4 years ago
2
missing mli_train_v1.jsonl

#7 vgopinath closed 4 years ago
1
NER on i2b2 datasets

#6 betterzhou closed 4 years ago
4
Clinical BERT, initialized from BERTBase is not available

#5 ghost closed 5 years ago
1
Known issue with section splitting in heuristic_tokenize.py

#4 EmilyAlsentzer opened 5 years ago
0
Two clinical BERT repos?

#3 sudarshan85 closed 5 years ago
3
Unable to reproduce results

#2 ZhaofengWu closed 5 years ago
5
Model size & casing

#1 ZhaofengWu closed 5 years ago
2