Generate BED file from Gene Panel > NGS pipeline

[aoprince]

As a bioinformatics analyst I want to generate a BED file from a gene panel for genomic test analysis so that I can use it as an input to an NGS pipeline tool.

• [ ] Get gene panel from panelapp, refer to issue #4
• [x] Generate/Get BED file
• [ ] Ask user what NGS pipeline tool is used and are more files needed in addition to the BED file
• [ ] Check format of input required for pipeline tool - naming convention etc. #12
• [ ] Make documentation
• [ ] Testing
• [ ] Include error handline and warnings

[raymondmiles]

Todo:

1. Extract ensembl IDs from PanelApp
2. Query Ensembl API to extract the BEDs
3. We merge the BED together -> Ask Users if they prefer individual BEDs or one merge BEDs
4. Return the file