Preliminary dashapp - Githubissues

EngreitzLab / gene_network_evaluation

Evaluation framework for computationally inferred gene networks from single-cell data.

GNU General Public License v2.0

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Preliminary dashapp #13

Closed adamklie closed 3 months ago

adamklie commented 3 months ago

First pass of making an app out of current code:

Built using dash
Currently has 4 sections (explained variance, gsea, motif and gwas)
Hardcoded to excel file in /example_data from cNMF on endothelilar perturb seq data

TODO

[ ] Add more plots, like regulator volcano plot, gene loadings and more. Have external list I can share
[ ] Clean up styling (font sizes), naming conventions
[ ] Refactor to pull data out of mudata once pipeline is settled
[ ] Decide if we want to allow users to perform different selections of genes in programs

Rest of commits are from GRN inference that shouldn't have any conflicts