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EngreitzLab / gene_network_evaluation

Evaluation framework for computationally inferred gene networks from single-cell data.
GNU General Public License v2.0
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Replace `pymemesuite` FIMO implementation with `tangermeme` #45

Closed adamklie closed 1 month ago

adamklie commented 2 months ago

Current scripted implementation: https://github.com/EngreitzLab/gene_network_evaluation/blob/jamboree-gene-programs-2024/app/tests/motif_enrichment.ipynb

Was failing due to documented tangermeme issue: https://github.com/jmschrei/tangermeme/issues/18

Could be fixed with v0.0.3 release today