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Ensembl / Bio-DB-HTS

Git repo for Bio::DB::HTS module on CPAN, providing Perl links into HTSlib
Apache License 2.0
24 stars 16 forks source link

Issues running in ubuntu #80

Closed juancresc closed 5 years ago

juancresc commented 5 years ago

I installed using perl INSTALL.pl because using cpan I always got a problem with htslib. So now when running there's still an issue

machine@1 :~/tephra$ tephra all -c tephra_config.yml Can't load '/usr/local/lib/x86_64-linux-gnu/perl/5.22.1/auto/Bio/DB/HTS/HTS.so' for module Bio::DB::HTS: libhts.so.2: cannot open shared object file: No such file or directory at /usr/lib/x86_64-linux-gnu/perl/5.22/DynaLoader.pm line 187. at /usr/local/lib/x86_64-linux-gnu/perl/5.22.1/Bio/DB/HTS/Kseq.pm line 71. Compilation failed in require at /usr/local/lib/x86_64-linux-gnu/perl/5.22.1/Bio/DB/HTS/Kseq.pm line 71. BEGIN failed--compilation aborted at /usr/local/lib/x86_64-linux-gnu/perl/5.22.1/Bio/DB/HTS/Kseq.pm line 71. Compilation failed in require at /usr/local/share/perl/5.22.1/Tephra/Stats/Age.pm line 17. BEGIN failed--compilation aborted at /usr/local/share/perl/5.22.1/Tephra/Stats/Age.pm line 17. Compilation failed in require at /usr/local/share/perl/5.22.1/Tephra/Command/age.pm line 11. BEGIN failed--compilation aborted at /usr/local/share/perl/5.22.1/Tephra/Command/age.pm line 11. Compilation failed in require at /usr/local/share/perl/5.22.1/App/Cmd.pm line 194. App::Cmd::_command("Tephra", HASH(0x1336f30)) called at /usr/local/share/perl/5.22.1/App/Cmd.pm line 171 App::Cmd::new("Tephra", HASH(0x1336f30)) called at /usr/local/bin/tephra line 25

avullo commented 5 years ago

@juancrescente can you provide a little bit more context? What's exactly the environment and command you've run?

thanks

avullo commented 5 years ago

Closing this as I'm not getting a reply.