make failed on macOS X 10.9.5

[JoseEspinosa]

When trying to make wiggletools I am getting the following error.

cd src; make -e
mkdir -p ../bin
cc -g -Wall -O3 -std=gnu99 -L/Users/jespinosa/software/userApps/kent/src/lib/ -L../lib -L/Users/jespinosa/software/htslib wiggletools.c -lwiggletools /Users/jespinosa/software/userApps/kent/src/lib/local/jkweb.a -lhts -lz -lpthread -lssl -lcrypto -ldl -lgsl -lgslcblas -lm -o ../bin/wiggletools 
Undefined symbols for architecture x86_64:
  "_ti_close", referenced from:
      _lineFileTabixMayOpen in jkweb.a(linefile.o)
      _lineFileClose in jkweb.a(linefile.o)
  "_ti_get_tid", referenced from:
      _lineFileSetTabixRegion in jkweb.a(linefile.o)
  "_ti_index_load", referenced from:
      _lineFileTabixMayOpen in jkweb.a(linefile.o)
  "_ti_iter_destroy", referenced from:
      _lineFileSetTabixRegion in jkweb.a(linefile.o)
      _lineFileClose in jkweb.a(linefile.o)
  "_ti_iter_first", referenced from:
      _lineFileTabixMayOpen in jkweb.a(linefile.o)
  "_ti_open", referenced from:
      _lineFileTabixMayOpen in jkweb.a(linefile.o)
  "_ti_queryi", referenced from:
      _lineFileSetTabixRegion in jkweb.a(linefile.o)
  "_ti_read", referenced from:
      _lineFileNext in jkweb.a(linefile.o)
ld: symbol(s) not found for architecture x86_64
clang: error: linker command failed with exit code 1 (use -v to see invocation)
make[1]: *** [../bin/wiggletools] Error 1
make: *** [Wiggletools] Error 2

Any clue? Thanks in advance!

[dzerbino]

Hello Jose,

This is my fault, I did not know how to contact all WiggleTools users. Please check out the manual and the dependencies, I replaced the Tabix dependency with an HtsLib dependency.

Cheers,

Daniel

[JoseEspinosa]

OK, thanks!