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Ensembl / WiggleTools

Basic operations on the space of numerical functions defined on the genome using lazy evaluators for flexibility and efficiency
Apache License 2.0
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failed test - diff tmp expected #26

Closed ChiWPak closed 6 years ago

ChiWPak commented 6 years ago

Any idea why this test would fail?


cd test; python2.7 test.py
Testing: ../bin/wiggletools do isZero diff fixedStep.bw variableStep.wig
Testing: ../bin/wiggletools diff fixedStep.bw variableStep.wig fixedStep.wig
Trailing tokens: the last tokens in your command were not read, check your syntax:
... fixedStep.wig
Testing: ../bin/wiggletools do isZero diff fixedStep.bw fixedStep.wig
Testing: ../bin/wiggletools do isZero offset -1 ratio variableStep.bw variableStep.wig
Testing: ../bin/wiggletools do isZero diff bam.bam pileup.bg
Testing: ../bin/wiggletools do isZero diff bam.bam cram.cram
Testing: ../bin/wiggletools do isZero diff bam.bam sam.sam
Testing: cat sam.sam | ../bin/wiggletools do isZero diff bam.bam sam -
Testing: ../bin/wiggletools do isZero diff overlapping.bed overlapping.bb
Testing: ../bin/wiggletools do isZero diff variableStep.bw variableStep.wig
Testing: ../bin/wiggletools do isZero diff vcf.vcf bcf.bcf
Testing: ../bin/wiggletools do isZero diff sum fixedStep.bw fixedStep.bw : scale 2 fixedStep.bw
Testing: ../bin/wiggletools do isZero diff sum fixedStep.bw fixedStep.bw : sum fixedStep.bw fixedStep.bw
Testing: ../bin/wiggletools do isZero diff ln fixedStep.bw sum map ln fixedStep.bw
Testing: ../bin/wiggletools do isZero diff ln exp fixedStep.bw fixedStep.wig
Testing: ../bin/wiggletools do isZero diff pow 2 fixedStep.bw mult fixedStep.wig fixedStep.wig
Testing: ../bin/wiggletools do isZero diff lt 5 fixedStep.wig gt -5 scale -1 fixedStep.wig
Testing: ../bin/wiggletools apply_paste tmp/regional_means.txt meanI overlapping.bed fixedStep.wig
Testing: ../bin/wiggletools print tmp/pearson.txt pearson fixedStep.wig variableStep.wig
Testing: ../bin/wiggletools profiles tmp/profiles.txt 3 overlapping.bed fixedStep.wig
Testing: ../bin/wiggletools profile tmp/profile.txt 3 overlapping.bed fixedStep.wig
Testing: ../bin/wiggletools do isZero diff fixedStep.wig overlaps fixedStep.wig fixedStep.wig
Testing: ../bin/wiggletools write_bg tmp/nearest_overlapping.bg nearest variableStep.wig overlapping.bed
Testing: ../bin/wiggletools write_bg tmp/nearest_fixedStep.bg nearest variableStep.wig fixedStep.bw
Testing: ../bin/wiggletools print - minI fixedStep.wig
Testing: ../bin/wiggletools print - maxI fixedStep.wig
Testing: ../bin/wiggletools do isZero diff overlapping_coverage.wig coverage overlapping.bed
Testing: ../bin/wiggletools do isZero diff trim overlapping.bed variableStep.wig mult overlapping.bed variableStep.wig
Testing: ../bin/wiggletools run program.txt
Testing: diff tmp expected
diff tmp/profiles.txt expected/profiles.txt
1,2c1,2
< chr1  3       7       2.000000        3.000000        9.000000
< chr1  4       9       3.000000        9.000000        13.000000
---
> chr1  3       7       2.666667        4.000000        12.000000
> chr1  4       9       5.000000        15.000000       21.666667
diff tmp/profile.txt expected/profile.txt
1,3c1,3
< 0     5.000000
< 1     12.000000
< 2     22.000000
---
> 0     7.666667
> 1     19.000000
> 2     33.666667
Traceback (most recent call last):
  File "test.py", line 112, in <module>
    assert test('diff tmp expected') == 0
AssertionError
make: *** [tests] Error 1```
dzerbino commented 6 years ago

Derr, I corrected the profile function and forgot to update the unit tests...