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Ensembl / WiggleTools

Basic operations on the space of numerical functions defined on the genome using lazy evaluators for flexibility and efficiency
Apache License 2.0
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Cannot find libhts.so.1 #79

Closed CLAIRE-cuhk closed 2 years ago

CLAIRE-cuhk commented 2 years ago

Hi, I am trying to install WiggleTools with command conda install -c bioconda wiggletools. Here is the message I got after installation: $wiggletools --help wiggletools: error while loading shared libraries: libhts.so.1: cannot open shared object file: No such file or directory

When I do which wiggletools, it appears the tool is already in the environment. $which wiggletools ~/Scratch/bioinfo_tools/miniconda/install/envs/bioinfo/bin/wiggletools

Could you help that out?

Thank you very much.

dzerbino commented 2 years ago

Dear @CLAIRE-cuhk ,

Thank you for your interest in Wiggletools. We do not maintain the conda installer, so it is hard to comment on why the dependency is broken, but in short you are missing htslib.

It would seem from the conda help pages that you can install it with the following command: 

conda install -c bioconda htslib

Hope this helps,

Daniel

sgiorgetti commented 2 years ago

Closing because of ageing. Please @CLAIRE-cuhk or anyone, feel free to re-open it should you need it.