Support gencode_primary for VEP REST (main)

Ensembl / ensembl-rest

Language agnostic RESTful data access to Ensembl data over HTTP

Apache License 2.0

138 stars 62 forks source link

Support gencode_primary for VEP REST (main) #653

Closed likhitha-surapaneni closed 1 month ago

likhitha-surapaneni commented 1 month ago

Description

Support gencode_primary flag for VEP REST

Use case

VEP and variation endpoints can now discover GENCODE Primary transcripts

Testing

curl 'http://wp-np2-25.ebi.ac.uk:3000/vep/human/id/rs699?gencode_primary=1' -H 'Content-type:application/json'

Dependency

https://github.com/Ensembl/ensembl-vep/pull/1699

Changelog

Additional flag gencode_primary in VEP/variation endpoints

sgiorgetti commented 1 month ago

@likhitha-surapaneni - the label "e113" suggests these changes are required for Ensembl release 113, but this PR is against main branch. May you clarify / confirm? Thanks

likhitha-surapaneni commented 1 month ago

Thanks @sgiorgetti , I made a similar PR against release/113 as well. This PR is intended for main