Filling out the template is required. Any pull request that does not include enough information to be reviewed in a timely manner may be closed at the maintainers' discretion;
if you're adding/updating documentation of an endpoint, make sure you add/update the necessary parameters to the (template) configuration files in the ensembl-rest_private repo
Description
This PR adds CACTUS_DB (Cactus alignment via database) to the list of genomic alignment methods in the documentation.
Use case
Several Ensembl divisions will have CACTUS_DB data in release 113 and subsequent releases.
Benefits
This will help make users aware of the availability of CACTUS_DB data.
Possible Drawbacks
None anticipated.
Testing
note to submitters and reviewers: documentation-only changes may reflect
changes in other repos that can result in new or different output from
REST endpoints. In turn, these may require new tests or changes to existing tests.
Have you added/modified unit tests to test the changes?
No unit tests have been added/modified.
If so, do the tests pass/fail?
N/A
Have you run the entire test suite and no regression was detected?
Comparative unit tests pass.
Changelog
Are you changing the functionality of an endpoint? If so, please give a one line summary for the public facing changelog.
eg. [/xenobiology/orthologs] Added the ability to look up orthologs and paralogs from klingons and andorians
Requirements
Description
This PR adds
CACTUS_DB
(Cactus alignment via database) to the list of genomic alignment methods in the documentation.Use case
Several Ensembl divisions will have
CACTUS_DB
data in release 113 and subsequent releases.Benefits
This will help make users aware of the availability of
CACTUS_DB
data.Possible Drawbacks
None anticipated.
Testing
note to submitters and reviewers: documentation-only changes may reflect changes in other repos that can result in new or different output from REST endpoints. In turn, these may require new tests or changes to existing tests.
Have you added/modified unit tests to test the changes?
No unit tests have been added/modified.
If so, do the tests pass/fail?
N/A
Have you run the entire test suite and no regression was detected?
Comparative unit tests pass.
Changelog
Are you changing the functionality of an endpoint? If so, please give a one line summary for the public facing changelog.
eg. [/xenobiology/orthologs] Added the ability to look up orthologs and paralogs from klingons and andorians
N/A