Closed dglemos closed 5 months ago
Issue reported here: https://github.com/Ensembl/ensembl-vep/issues/1703
The option individual_zyg uses the following variables:
individual_zyg
$vf->{hom_ref}->{$ind} = 1
$vf->{non_variant}->{$ind} = 1
However, these variables are used in other parts of the code as: vf->{hom_ref} = 1 $vf->{non_variant} = 1
vf->{hom_ref} = 1
$vf->{non_variant} = 1
The solution is to rename the variables.
Testing Input:
chr1 115258730 . C . . . . GT 0/0
Fixed. Thanks, @nakib103!
dglemos
commented
5 months ago dglemos
commented
5 months ago
Issue reported here: https://github.com/Ensembl/ensembl-vep/issues/1703
The option
individual_zyguses the following variables:$vf->{hom_ref}->{$ind} = 1$vf->{non_variant}->{$ind} = 1However, these variables are used in other parts of the code as:
vf->{hom_ref} = 1$vf->{non_variant} = 1The solution is to rename the variables.
Testing Input:
CHROM POS ID REF ALT QUAL FILTER INFO FORMAT ind
chr1 115258730 . C . . . . GT 0/0